../../tmp/servers/virsirnadb/426229587
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1810 | 1 | aattaggacactaatgcta | 19 | |
| M33854.1 | CXA3CG Coxsackievirus B3 (CVB3) complete genome | 6825 | ................... | 6843 | 100 |
| M16572.1 | CXA3G Coxsackievirus B3, complete genome | 6824 | ................... | 6842 | 100 |
| M88483.1 | CXAB3CG Coxsackievirus B3 mRNA, complete genome | 6826 | ................... | 6844 | 100 |
| AF231763.1 | Coxsackievirus B3 strain 31-1-93, complete genome | 6826 | ................... | 6844 | 100 |
| AF231764.1 | Coxsackievirus B3 strain P, complete genome | 6826 | ................... | 6844 | 100 |
| AF231765.1 | Coxsackievirus B3 strain PD, complete genome | 6826 | ................... | 6844 | 100 |
| AY752945.1 | Human coxsackievirus B3 strain 0, complete genome | 6826 | ................... | 6844 | 100 |
| AY752946.1 | Human coxsackievirus B3 strain 20, complete genome | 6826 | ................... | 6844 | 100 |
| AY752944.2 | Human coxsackievirus B3 strain 28, complete genome | 6826 | ................... | 6844 | 100 |
| AF499635.1 | Human coxsackievirus A1 strain Tompkins, complete genome | 6852 | ..........t........ | 6870 | 94 |
| EF015886.1 | Human enterovirus 96 strain BAN00-10488, complete genome | 6933 | _...............t.. | 6950 | 89 |
| AF083069.1 | Echovirus 5, complete genome | 6859 | ...c.............._ | 6876 | 89 |
| AF241359.1 | Enterovirus CA55-1988, complete genome | 6837 | ...c.............._ | 6854 | 89 |
| AY302539.1 | Human echovirus 13 strain Del Carmen complete genome | 6835 | ...c.............._ | 6852 | 89 |
| AY302540.1 | Human echovirus 14 strain Tow complete genome | 6876 | ............c....._ | 6893 | 89 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 6842 | ...c.............._ | 6859 | 89 |
| AY302544.1 | Human echovirus 19 strain Burke complete genome | 6859 | ...c.............._ | 6876 | 89 |
| AY302546.1 | Human echovirus 20 strain JV-1 complete genome | 6820 | ...c.............._ | 6837 | 89 |
| AY302548.1 | Human echovirus 24 strain DeCamp complete genome | 6859 | ...c.............._ | 6876 | 89 |
| AY302550.1 | Human echovirus 26 strain Coronel complete genome | 6849 | ......a..........._ | 6866 | 89 |
| AY302551.1 | Human echovirus 27 strain Bacon complete genome | 6837 | ......a..........._ | 6854 | 89 |
| AY302552.1 | Human echovirus 29 strain JV-10 complete genome | 6853 | ...c.............._ | 6870 | 89 |
| AY302554.1 | Human echovirus 31 strain Caldwell complete genome | 6858 | ...c.............._ | 6875 | 89 |
| AY302555.1 | Human echovirus 32 strain PR-10 complete genome | 6846 | ...c.............._ | 6863 | 89 |
| EF174468.1 | Human coxsackievirus B2 isolate KOR 04-243, complete genome | 6832 | .........t........_ | 6849 | 89 |
| DQ246620.1 | Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome | 6854 | ...c............t.. | 6872 | 89 |
| EF371880.2 | Human enterovirus B isolate SE-03-78616, complete genome | 6830 | .........c..c...... | 6848 | 89 |
| AY896765.1 | Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g | 6830 | _..c.............._ | 6846 | 84 |
| AF499643.1 | Human coxsackievirus A22 strain Chulman, complete genome | 6862 | ...c..a..........._ | 6879 | 84 |
| AY876912.1 | Human enterovirus Ningbo3-02, complete genome | 6916 | ............ct...._ | 6933 | 84 |
| AY876912.1 | Human enterovirus Ningbo3-02, complete genome | 783 | _..g..a.........___ | 797 | 68 |
| AY876913.1 | Human enterovirus Hangzhou13-02, complete genome | 6916 | ............ct...._ | 6933 | 84 |
| AY876913.1 | Human enterovirus Hangzhou13-02, complete genome | 783 | _..g..a.........___ | 797 | 68 |
| D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 6875 | ............c...t._ | 6892 | 84 |
| AF162711.1 | Echovirus 30 strain Bastianni, complete genome | 6862 | _.....a.........t.. | 6879 | 84 |
| AF230973.1 | AF230973 Enterovirus Yanbian 96-83csf, complete genome | 6825 | ...c..a..........._ | 6842 | 84 |
| AF311938.1 | Human echovirus 30 strain Bastianni, complete genome | 6867 | _.....a.........t.. | 6884 | 84 |
| AY673831.1 | Human coxsackievirus B3 strain GA, complete genome | 6827 | ..........t.....t._ | 6844 | 84 |
| EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 6819 | ...c............t._ | 6836 | 84 |
| AJ276224.1 | Human echovirus 11 genomic RNA for polyprotein | 6857 | _...........c...t._ | 6873 | 78 |
| AJ493062.2 | Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496 | 6842 | _..c............t._ | 6858 | 78 |
| AY843305.1 | Human enterovirus 87 strain BAN01-10396, complete genome | 6849 | _..c..a..........._ | 6865 | 78 |
| AB426610.1 | Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 | 6853 | _.....a.........t._ | 6869 | 78 |
| AB426611.1 | Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 | 6839 | _.....a.........t._ | 6855 | 78 |
| AB426611.1 | Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 | 2472 | ____..........a.... | 2486 | 73 |
| AF499640.1 | Human coxsackievirus A18 strain G13, complete genome | 6915 | ............ct.a.._ | 6932 | 78 |
| AF465513.1 | Human coxsackievirus A18 strain G-13, complete genome | 6915 | ............ct.a.._ | 6932 | 78 |
| AJ544513.1 | Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 | 6898 | _...........ct.a... | 6915 | 78 |
| DQ443001.1 | Human coxsackievirus A24 isolate DSO-52/2005, complete genome | 6921 | ............ct.a.._ | 6938 | 78 |
| DQ443001.1 | Human coxsackievirus A24 isolate DSO-52/2005, complete genome | 788 | _..g..a.........___ | 802 | 68 |
| DQ443002.1 | Human coxsackievirus A24 isolate DSO-26/2005, complete genome | 6921 | ............ct.a.._ | 6938 | 78 |
| DQ443002.1 | Human coxsackievirus A24 isolate DSO-26/2005, complete genome | 788 | _..g..a.........___ | 802 | 68 |
| DQ890386.1 | Human poliovirus 2 strain NIE0110767, complete genome | 6899 | ...c.........t.a.._ | 6916 | 78 |
| AF114383.1 | Coxsackievirus B5 strain Faulkner, complete genome | 6826 | .........t..t...t._ | 6843 | 78 |
| AJ577590.1 | Human echovirus 11, isolate FIN-0666, complete virion genome | 6858 | .........t..c...t._ | 6875 | 78 |
| AJ577594.1 | Human echovirus 11, isolate ROU-9191, complete virion genome | 6858 | .........t..c...t._ | 6875 | 78 |
| AY843300.1 | Human enterovirus 82 strain USA/CA64-10390, complete genome | 6859 | .........c..t...t._ | 6876 | 78 |
| AJ849942.1 | Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/ | 6853 | .........t..c...t._ | 6870 | 78 |
| EF634316.1 | Human echovirus 11 strain D207, complete genome | 6859 | .........t..c...t._ | 6876 | 78 |
| AF326764.2 | Simian enterovirus 46 strain OM22 (P15), complete genome | 6835 | ...c..a.........a._ | 6852 | 78 |
| FJ914252.2 | Human poliovirus 3 strain SWI10947, complete genome | 6893 | ............_______ | 6904 | 63 |
| X00595.1 | Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab)) | 6898 | _...........cc.a.._ | 6914 | 73 |
| D90457.1 | CXA24CG Human coxsackievirus A24 DNA, complete genome | 6922 | _...........ct.a.._ | 6938 | 73 |
| AY184220.1 | Human poliovirus 2 strain Sabin 2, complete genome | 6898 | _...........cc.a.._ | 6914 | 73 |
| AY177685.1 | Human poliovirus 2, complete genome | 6898 | _...........ct.a.._ | 6914 | 73 |
| AY278549.1 | Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome | 6898 | _...........cc.a.._ | 6914 | 73 |
| AF111961.2 | Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome | 6903 | _...........ct.a.._ | 6919 | 73 |
| DQ205099.1 | Human poliovirus 2 clone S2R9, complete genome | 6898 | _...........cc.a.._ | 6914 | 73 |
| EF456707.1 | Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds | 6850 | _...........cc.a.._ | 6866 | 73 |
| HM107835.1 | Human poliovirus 2 isolate CHN8316, complete genome | 6898 | _...........cc.a.._ | 6914 | 73 |
| AY843303.1 | Human enterovirus 85 strain BAN00-10353, complete genome | 6848 | _..c..a.........t._ | 6864 | 73 |
| AY843304.1 | Human enterovirus 86 strain BAN00-10354, complete genome | 6827 | _..c..a.........t._ | 6843 | 73 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 6853 | _...........cc..a._ | 6869 | 73 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 6853 | _...........cc..a._ | 6869 | 73 |
| AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 6852 | _...........cc..a._ | 6868 | 73 |
| AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 6852 | _...........cc..a._ | 6868 | 73 |
| FJ172159.1 | Human enterovirus 71 isolate NUH0075/SIN/08, complete genome | 6814 | _...........cc..a._ | 6830 | 73 |
| AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 6853 | _...........cc..a._ | 6869 | 73 |
| AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 6853 | _...........cc..a._ | 6869 | 73 |
| AB575939.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365 | 6784 | _...........cc..a._ | 6800 | 73 |
| AB575941.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248 | 6792 | _...........cc..a._ | 6808 | 73 |
| AB575942.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369 | 6787 | _...........cc..a._ | 6803 | 73 |
| AB575948.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 6810 | _...........cc..a._ | 6826 | 73 |
| AY036579.1 | Human echovirus 7 strain Wallace polyprotein gene, complete cds | 701 | ...c.........______ | 713 | 63 |
| AF465516.1 | Human echovirus 7 strain Wallace, complete genome | 701 | ...c.........______ | 713 | 63 |
| AY302559.1 | Human echovirus 7 strain Wallace complete genome | 701 | ...c.........______ | 713 | 63 |
| AY421760.1 | Human coxsackievirus A2 strain Fleetwood, complete genome | 5606 | ___.t...........___ | 5618 | 63 |
| AY421764.1 | Human coxsackievirus A6 strain Gdula, complete genome | 5642 | ___.t...........___ | 5654 | 63 |
| AY421767.1 | Human coxsackievirus A10 strain Kowalik, complete genome | 5617 | ___.t...........___ | 5629 | 63 |
| AY421768.1 | Human coxsackievirus A12 strain Texas-12, complete genome | 5612 | ___.t...........___ | 5624 | 63 |
| FJ898290.1 | Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl | 6898 | _..........._______ | 6908 | 57 |
| AB575916.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161 | 5558 | _____...........___ | 5568 | 57 |
| AB575936.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961 | 4679 | ________........... | 4689 | 57 |